If your caching plugin creates version of the javascript files loaded on page then there is the potential that Plugin Organizer will cause the caching plugin to recreate the javascript files..
Copy PluginOrganizerMU class php file to the folder then deactivate and reactivate the plugin.
Go to Plugin Organizer settings page and check the box next to each of the roles you want to be able to disable enable plugins with.
Fixed in the SQL like statements used by the plugin search on PO settings page introduced with change made in wordpress 4.8.3. 9.2.5.
Set the tolerance of the droppable elements on the right side of the organizer meta box to pointer so the drag elements aren't dropped in the wrong place. 9.2.
Moved the storage of the permalink and plugin lists to custom table to fix issue with https core trac wordpress org ticket 25690..
Fixed issue with activation where too many posts on the site caused the php to run out of memory and the activation to fail. 3.0.5.
Commented out the code that deleted the tables and added option to the databse to prevent multiple imports.
Fixed bug where the MU plugin chopped the url before checking it so it looped 15 times on the homepage before stopping the search for fuzzy url..
Redid the sort functions to use PHP's array multisort. 0.1.1 improved the ajax requests on the plugin admin page. 0.1.
Read more